vvFrontier Barracks - common site which you'll run often.
Warp to 0, approach rats and MJD to get on top of them, bastion
Kill Sleepless Preserver with Hail, then Sleepless Upholder
Load barrage and kill cruisers then battleships (slowest part of the site)
Time your bastion so it's down as you kill the last rat, you can finish him out of bastion too, you will have range. You can also double click in space to start aligning in bastion.
MJD on top of last wave while reloading to Hail, massacre cruisers, kill battleships, smartbomb frigs. Be careful not to MJD too early and get thrown off too far from the rats, you can add minutes to the site if you do it wrong.
Frontier Command Post - another common site you'll run a lot. There is some debate about how you can clear the first wave the easiest, but this is my method:
Warp to 0 with Barrage preloaded (load tracking ammo in Magnetar), do 1 bastion cycle and kill all Emergent Preservers to force the second wave to spawn asap. Don't cycle bastion more than once.
Approach the new spawn and MJD on top of them, bastion up and start massacring cruisers with Hail. Leave 1 cruiser up, then kill the Sleepless Defender battleships. Smartbomb frigs when they're in range. Time your bastion so it goes down as you're finishing the last rat.
MJD on top of third wave, reload while you're MJDing, kill Awakened Preservers, then the Battleships, then the Awakened Defenders.
Sleeper information Sanctum - somewhat uncommon site, real treat to run:
EITHER: warp in beforehand with a cloaky/pod/apotheosis and bookmark the central structure to use as the warpin; or warp in at 100 with marauder, MJD on top of rats if the range is right; if the range is not right (too close), MJD AWAY and warp to the central structure near the rats.
Just clear everything with Hail while minding the triggers. No fancy maneuvers needed.